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Image Search Results
Journal: Nature Communications
Article Title: Tissue extracellular matrix hydrogels as alternatives to Matrigel for culturing gastrointestinal organoids
doi: 10.1038/s41467-022-29279-4
Figure Lengend Snippet: a Brightfield images of gastric organoids grown in SEM hydrogels and Matrigel (MAT) at day 5 (scale bar = 200 µm, independent experiments = 3). b Quantification of gastric organoid formation efficiency in SEM hydrogels compared to in MAT ( N = 6, independent experiments = 3). c qPCR analysis to compare mRNA expression in gastric organoids grown in each hydrogel (SEM 7 mg ml −1 versus MAT, * p = 0.0174 for Pgc , ** p = 0.0051 for Atp4a , *** p < 0.0001 for Atp4b ; SEM 5 mg ml −1 versus MAT, ** p = 0.0029; N = 4, independent experiments = 3). d Comparison of mRNA expression in gastric organoids grown in 5 mg ml −1 SEM hydrogel and MAT ( N = 4, independent experiments = 3). e Immunofluorescent staining for stemness markers (SOX9 and KI67), differentiation markers (MUC5AC, CHGA, and HK), a tight junction marker (ZO1), and a cell–cell adhesion/interaction marker (ECAD) in gastric organoids grown in 5 mg ml −1 SEM hydrogel and MAT (scale bars = 50 µm, independent experiments = 3). f Fluorescent staining with acridine orange for gastric organoids grown in 5 mg ml −1 SEM hydrogel and MAT (scale bars = 100 µm), and quantification of fluorescence (600–650 nm)/fluorescence (500–550 nm) from organoids in each hydrogel ( N = 12 for SEM and N = 14 for MAT, independent experiments = 2). The color scale indicates the relative number of pixels displayed in the area. g Brightfield images of intestinal organoids grown in IEM hydrogels and MAT at day 6 (scale bar = 200 µm, independent experiments = 3). h Quantification of intestinal organoid formation efficiency in IEM hydrogels compared to in MAT ( N = 4, independent experiments = 3). i qPCR analysis to compare mRNA expression of intestinal organoids within each hydrogel (IEM 2 mg ml −1 versus MAT, *** p < 0.0001 for Lgr5 , *** p = 0.0009 for Muc2 ; IEM 3 mg ml −1 versus MAT, *** p = 0.0003 for Lgr5 , ** p = 0.0032 for Muc2 ; IEM 4 mg ml −1 versus MAT, * p = 0.0455 for Muc2 ; N = 4, independent experiments = 3). j Comparison of mRNA expression of intestinal organoids grown in 2 mg ml −1 IEM hydrogel and MAT (IEM versus MAT, *** p < 0.0001 for Lgr5 , *** p < 0.0001 for Axin2 , ** p = 0.0035 for Muc2 ; N = 4, independent experiments = 3). k Immunofluorescent staining for a stemness marker, differentiation markers (MUC2, LYZ, CHGA, and VILLIN), a tight junction marker, and a cell–cell adhesion/interaction marker in intestinal organoids grown in 2 mg ml −1 IEM hydrogel and MAT (scale bars = 50 µm, independent experiments = 3). l Brightfield images of intestinal organoids grown in each hydrogel after forskolin treatment (scale bar = 100 µm), and m the area of forskolin-treated organoids normalized to the organoid area prior to forskolin treatment in each group ( N = 4, independent experiments = 3). The data in b – d , f , h – j , and m are presented as mean ± S.D. Statistical significance was analyzed using one-way ANOVA with Tukey’s multiple comparisons test ( c , i ) and unpaired, two-sided student’s t -test ( d , j ).
Article Snippet: The following TaqMan gene expression assay kits were used for qPCR: Lgr5 (Mm00438890_m1), Pgc (Mm00482488_m1), Atp4a (Mm00444417_m1), Atp4b (Mm00437657_m1), Axin2 (Mm00443610_m1), Muc6 (Mm00725165_m1), Gif (Mm00433596_m1), Pga5 (Mm01208256_m1), Muc2 (Mm00458299_m1), Olfm4 (Mm01320260_m1), Lyz1 (Mm00657323_m1), Chga (
Techniques: Expressing, Comparison, Staining, Marker, Fluorescence
Journal: mBio
Article Title: Citrobacter rodentium Infection Induces Persistent Molecular Changes and Interferon Gamma-Dependent Major Histocompatibility Complex Class II Expression in the Colonic Epithelium
doi: 10.1128/mbio.03233-21
Figure Lengend Snippet: Changes to the cellular composition of the crypt. (A, C, G, and K) Temporal measurements of CCH (A), the crypt PCNA + zone (C), goblet cell density (G), and CHGB-positive cell density (K). Each point represents the mean for an individual mouse. *, P < 0.0.5; ****, P < 0.0001 (by one-way ANOVA with Dunnett’s posttest for multiple comparisons to the control group [uninfected {UI} mice]). (B and L) Representative distal colonic sections showing temporal changes in the crypt PCNA + zone (B) and CHGB-positive cell density (L). Bars = 50 μm (B) or 100 μm (L). (D and F) Average Log 2 FC values of selected significantly changed (FDR of <0.05 by one-way ANOVA) proteins involved in cell proliferation and cIEC metabolic changes (D) and cIEC markers (F). DSC, deep secretory cell. In panel F, “−ve” indicates that proteins are negative regulators of terminal differentiation into the specified cell type. (E, I, and J) qRT-PCR of the indicated mRNAs isolated from cIECs. Each point represents an individual mouse. *, P < 0.05; **, P < 0.01 (by one-way ANOVA with Dunnett’s posttest for multiple comparisons to the control group [uninfected mice]). For panels G and J, square data points were identified as outliers and not included in the statistical analysis. (H) z scores of selected protein abundances across the entire C. rodentium infection time course (4 to 48 DPI). Means ± standard errors of the means (SEM) are shown.
Article Snippet: The following primary antibodies were used: rabbit polyclonal anti‐ C. rodentium antibody (1:50) (Statens Serum Institute, Copenhagen, Denmark), mouse anti-PCNA antibody (1:500) (catalog number ab29; Abcam), and
Techniques: Control, Quantitative RT-PCR, Isolation, Infection